Bobcat339 hydrochloride

Catalog No.S6682 Batch:S668202

Technical Data

Formula	C₁₆H₁₃Cl₂N₃O
Molecular Weight	334.2	CAS No.	2436747-44-1
Solubility (25°C)*	In vitro	DMSO	60 mg/mL (179.53 mM)
		Ethanol	1 mg/mL (2.99 mM)
		Water	Insoluble
* <1 mg/ml means slightly soluble or insoluble. * Please note that Selleck tests the solubility of all compounds in-house, and the actual solubility may differ slightly from published values. This is normal and is due to slight batch-to-batch variations. * Room temperature shipping (Stability testing shows this product can be shipped without any cooling measures.)

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Biological Activity

Description

Bobcat339 is a selective cytosine-based TET enzyme inhibitor with IC50 of 33 μM and 73 μM for TET1 and TET2, respectively. Bobcat339 can reduce DNA 5-hydroxymethylcytosine abundance by inhibiting TET enzyme function in living cells and provide support for its utility as a viable pharmacological probe.

Targets

TET1 ^[1] (Cell-free assay)	TET2 ^[1] (Cell-free assay)
33 μM	73 μM

In vitro

Bobcat339, the TET2 enzyme activity inhibitor, decreases the TET2 enzyme activity and protects cells from neurotoxin damage in SH-SY5Y cells.^[2]

In vivo

Bobcat339 hydrochloride is a potent and selective cytosine-based inhibitor of TET enzyme.

Protocol (from reference)

Cell Assay:^{^[2]}	Cell lines SH-SY5Y neuroblastoma cells Concentrations 3 μM Incubation Time 12 h Method The CCK-8 assay kit was used to determine cell viability. SH-SY5Y cells are seeded into 96-well plates at a density of 5,000 cells/well with 100 μl of cell medium in each well. Bobcat339 (3 μM) is preincubated with cells for 12 h before MPP+ (2.5 mM) treatment. Then, 10 μl of CCK-8 working solution is added to each well to incubate for about 1 h at 37 C. The wells containing only the culture medium served as blanks. The absorbance value at 450 nm is measured.

Cell Assay:^{^[2]}

Cell lines
SH-SY5Y neuroblastoma cells
Concentrations
3 μM
Incubation Time
12 h
Method
The CCK-8 assay kit was used to determine cell viability. SH-SY5Y cells are seeded into 96-well plates at a density of 5,000 cells/well with 100 μl of cell medium in each well. Bobcat339 (3 μM) is preincubated with cells for 12 h before MPP+ (2.5 mM) treatment. Then, 10 μl of CCK-8 working solution is added to each well to incubate for about 1 h at 37 C. The wells containing only the culture medium served as blanks. The absorbance value at 450 nm is measured.

References

Selleck's Bobcat339 hydrochloride has been cited by 11 publications

Distinct dynamics of parental 5-hydroxymethylcytosine during human preimplantation development regulate early lineage gene expression [ Nat Cell Biol, 2024, 10.1038/s41556-024-01475-y]	PubMed: 39080410
Understanding the function of Pax5 in development of docetaxel-resistant neuroendocrine-like prostate cancers [ Cell Death Dis, 2024, 15(8):617]	PubMed: 39183332
Ten-eleven translocation-2-mediated macrophage activation promotes liver regeneration [ Cell Commun Signal, 2024, 22(1):95]	PubMed: 38308318
Ten-eleven translocation-2-mediated macrophage activation promotes liver regeneration [ Cell Commun Signal, 2024, 22(1):95]	PubMed: 38308318
Association of DNA methylation/demethylation with the functional outcome of stroke in a hyperinflammatory state [ Neural Regen Res, 2024, 19(10):2229-2239]	PubMed: 38488557
Repeat DNA methylation is modulated by adherens junction signaling [ Commun Biol, 2024, 7(1):286]	PubMed: 38454140
Association of DNA methylation/demethylation with the functional outcome of stroke in a hyperinflammatory state [ Neural Regeneration Research, 2024, 19(10):p 2229-2239]	PubMed: none
TET Family Members Are Integral to Porcine Oocyte Maturation and Parthenogenetic Pre-Implantation Embryogenesis [ Int J Mol Sci, 2023, 24(15)12455]	PubMed: 37569830
TET2 amplifies RIPK3/MLKL necroptosis signal by upregulation of PLK3 to promote UVB-induced skin photodamage [ Research Square, 2023, 10.21203/rs.3.rs-2709268/v1]	PubMed: none
SIRT1 Deacetylates TET2 and Promotes Its Ubiquitination Degradation to Achieve Neuroprotection Against Parkinson's Disease [ Front Neurol, 2021, 12:652882]	PubMed: 33935952

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SHIPPING AND STORAGE
Selleck products are transported at room temperature. If you receive the product at room temperature, please rest assured, the Selleck Quality Inspection Department has conducted experiments to verify that the normal temperature placement of one month will not affect the biological activity of powder products. After collecting, please store the product according to the requirements described in the datasheet. Most Selleck products are stable under the recommended conditions.

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